Heng Li
Heng Li | |
---|---|
Institutions |
Wellcome Trust Sanger Institute Broad Institute Beijing Genomics Institute |
Thesis | Constructing the TreeFam database (2006) |
Doctoral advisor | Wei-Mou Zheng[1] |
Known for |
Bioinformatics Burrows–Wheeler transform Samtools TreeFam |
Notable awards | Benjamin Franklin Award (Bioinformatics) (2012) [2] |
Website lh3lh3 |
Heng Li is a Chinese bioinformatics research scientist currently working at the Broad Institute in Cambridge, Massachusetts with David Reich and David Altshuler.[3] Li's work has made several important contributions in the field of next generation sequencing.
Education
Li majored in physics at Nanjing University during 1997-2001.[4] He received his PhD from the Institute of Theoretical Physics at the Chinese Academy of Sciences in 2006. His thesis, titled "Constructing the TreeFam database", was supervised by Wei-Mou Zheng.[1]
Research
Li was involved in a number of projects while working at the Beijing Genomics Institute from 2002 to 2006. These included studying rice finishing,[5] silkworm sequencing,[6] and genetic variation in chickens.[7]
From 2006 to 2009, Li worked on a postdoctoral research fellowship with Richard M. Durbin at the Wellcome Trust Sanger Institute.[8] During this time, Li made several important contributions to the field of next generation sequencing (NGS) through the development of software such as the SAMtools NGS utilities,[9] the Burrows–Wheeler aligner (BWA),[10] MAQ,[11] TreeSoft and TreeFam.[12]
Li joined the Broad Institute in 2009, working in the core faculty lab of David Altshuler,[8][13] which investigates the discovery and understanding of the genetic causes of disease.
As of April 2015, Li's papers on SAMtools[9] and BWA[10] (sequence alignment using the Burrows-Wheeler transform) have both been cited over 5,000 times.[14]
Awards
In 2012, Li won the Benjamin Franklin award[2] in bioinformatics. Li became the fourth former member of Richard Durbin's lab to win the award, following Sean Eddy, Ewan Birney and Alex Bateman.[15]
Personal
Li lives in Boston with his wife and daughter.[3]
References
- 1 2 Li, Heng (2006). Constructing the TreeFam database (PDF) (PhD thesis). Chinese Academy of Sciences.
- 1 2 "Broad's Heng Li Wins 2012 Benjamin Franklin Award - Bio-IT World". Archived from the original on 2012-03-14.
- 1 2 "Heng Li's Homepage". Archived from the original on 2012-03-14.
- ↑ https://www.linkedin.com/in/lh3lh3
- ↑ Yu, Jun; et al. "The Genomes of Oryza sativa: A History of Duplications". PLoS Biology. 3 (2): e38. doi:10.1371/journal.pbio.0030038. PMC 546038. PMID 15685292.
- ↑ Xia, Q; et al. (Dec 10, 2004). "A draft sequence for the genome of the domesticated silkworm (Bombyx mori).". Science. 306 (5703): 1937–40. doi:10.1126/science.1102210. PMID 15591204.
- ↑ Ka-Shu Wong, Gane; et al. (9 December 2004). "A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms". Nature. 432 (7018): 717–722. doi:10.1038/nature03156. PMC 2263125. PMID 15592405.
- 1 2 "ResearcherID: Heng Li". http://www.researcherid.com. Retrieved 11 September 2014. External link in
|website=
(help) - 1 2 Li, H.; Handsaker, B.; Wysoker, A.; Fennell, T.; Ruan, J.; Homer, N.; Marth, G.; Abecasis, G.; Durbin, R.; 1000 Genome Project Data Processing Subgroup (2009). "The Sequence Alignment/Map format and SAMtools". Bioinformatics. 25 (16): 2078–2079. doi:10.1093/bioinformatics/btp352. PMC 2723002. PMID 19505943.
- 1 2 Li, H.; Durbin, R. (2009). "Fast and accurate short read alignment with Burrows-Wheeler transform". Bioinformatics. 25 (14): 1754–1760. doi:10.1093/bioinformatics/btp324. PMC 2705234. PMID 19451168.
- ↑ Li, H.; Ruan, J.; Durbin, R. (2008). "Mapping short DNA sequencing reads and calling variants using mapping quality scores". Genome Research. 18 (11): 1851–1858. doi:10.1101/gr.078212.108. PMC 2577856. PMID 18714091.
- ↑ Li, H.; Coghlan, A.; Ruan, J.; Coin, L. J.; Hériché, J. K.; Osmotherly, L.; Li, R.; Liu, T.; Zhang, Z.; Bolund, L.; Wong, G. K.; Zheng, W.; Dehal, P.; Wang, J.; Durbin, R. (2006). "TreeFam: A curated database of phylogenetic trees of animal gene families". Nucleic Acids Research. 34 (90001): D572–D580. doi:10.1093/nar/gkj118. PMC 1347480. PMID 16381935.
- ↑ "Current Lab Members - Altshuler Lab". https://www.broadinstitute.org. Retrieved 11 September 2014. External link in
|website=
(help) - ↑ "Heng Li - Google Scholar Citations". http://scholar.google.co.uk. Retrieved 16 April 2015. External link in
|website=
(help) - ↑ "Heng Li Credits Durbin Pedigree in Accepting Franklin Award". http://www.bio-itworld.com. Retrieved 11 September 2014. External link in
|website=
(help)